usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 46.6940434782609 50.5274347826087 33.2654782608696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1300 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 718 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 281, nonpolar: 247, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 36.71980 56.63839 41.03038 60.50394 23.36002 41.37875 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 352 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 322 Spheres center of coords (x y z): 48.6459672360248 50.7163162111801 31.8690790372671 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.86631380747184 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 23