usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 8.40539130434783 21.3560869565217 23.5626521739131 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1194 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 732 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 732 Number of spheres polar: 269, nonpolar: 357, out of current total: 732 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.58583 18.39749 11.51043 31.07900 13.64617 33.42313 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 352 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 227 Spheres center of coords (x y z): 5.37962766519823 23.9526460352423 25.2171391629956 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.85197096374472 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 23