There are 23 ligand heavy atoms Ligand center of coords (x y z): 8.40539130434783 21.3560869565217 23.5626521739131 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1194 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 885 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 884 Number of spheres polar: 312, nonpolar: 441, out of current total: 884 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.52730 20.37823 9.37275 33.21087 11.59000 35.16190 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 272 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 136 Spheres center of coords (x y z): 4.20382132352941 23.6938131617647 24.79759375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.10891118042265 Final number of output spheres is: 120 Number of polar spheres: 39 Number of nonpolar spheres: 61 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 23