usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 0.085304347826087 -14.828347826087 10.4320434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1439 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 715 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 238, nonpolar: 345, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.90856 4.93600 -24.82708 -4.90960 0.43659 20.42558 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 377 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 313 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): -1.4528843129771 -17.8288189694657 13.7553128244275 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43380104177692 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23