Distance from surface specified: 1.80 There are 23 ligand heavy atoms Ligand center of coords (x y z): 0.085304347826087 -14.828347826087 10.4320434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15820 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11844 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11491 Number of spheres polar: 5210, nonpolar: 5138, out of current total: 11491 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.91400 14.08520 -28.82720 -0.82840 -3.54740 24.41900 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1564 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 698 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 626 Spheres center of coords (x y z): -5.93445399361022 -14.1043089456869 12.2708827476038 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 13.0907960521349 Final number of output spheres is: 200 Number of polar spheres: 105 Number of nonpolar spheres: 87 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 23