usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 30.60996 14.9356 -1.0872 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1604 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 743 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 743 Number of spheres polar: 190, nonpolar: 368, out of current total: 743 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.72111 40.58648 5.55595 24.88170 -11.08590 8.72560 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 200 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 34.8165557526882 16.4814620967742 -1.37660129032258 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49358484919744 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 25