usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.574625 28.26565625 24.0585625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1510 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 901 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 900 Number of spheres polar: 176, nonpolar: 476, out of current total: 900 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.63767 40.53346 18.29989 38.23114 14.22829 34.04311 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 507 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 440 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 417 Spheres center of coords (x y z): 31.7928713669065 25.6931882254197 23.3479800959232 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.10563173169307 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32