usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 30.5036666666667 14.661 -1.05120833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1463 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 196, nonpolar: 452, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.53967 40.48938 4.98856 24.65958 -11.00944 8.93554 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 34.4748053378378 16.7228181081081 -1.49753527027027 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21839299153339 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24