usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.22840625 16.25209375 -1.92059375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1573 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 855 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 855 Number of spheres polar: 157, nonpolar: 541, out of current total: 855 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.55646 40.18761 6.31261 26.24438 -11.50381 8.06250 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 460 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 402 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 395 Spheres center of coords (x y z): 32.8605429873418 16.5096101518987 -1.22184065822785 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.41144334290691 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32