usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.43490625 16.7848125 -1.6626875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1514 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 797 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 797 Number of spheres polar: 200, nonpolar: 393, out of current total: 797 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.49268 40.43048 6.83870 26.77537 -11.62222 8.21918 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 434 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 364 Spheres center of coords (x y z): 34.1453724725274 17.6702645879121 -1.93624082417582 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44571741626114 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32