usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.72765625 17.0343125 -1.69015625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1642 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 928 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 928 Number of spheres polar: 235, nonpolar: 486, out of current total: 928 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.79513 40.70899 7.17190 27.03300 -11.56627 8.24846 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 517 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 436 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 427 Spheres center of coords (x y z): 34.1659629274005 18.7179969086651 -2.11277660421546 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.384384949197 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 32