usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.43453125 16.84446875 -1.67925 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1455 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 817 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 817 Number of spheres polar: 185, nonpolar: 489, out of current total: 817 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.43455 40.38995 7.02925 26.82882 -11.62837 8.29888 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 33.7870973298429 18.5451823560209 -1.96722314136126 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.31350294471685 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32