usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 11.6472 23.61808 33.85628
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1520
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 768
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 768
Number of spheres polar: 141, nonpolar: 477, out of current total: 768
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.66454 20.96430 13.64104 33.48115 24.78424 43.84937
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 382
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 343
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 330
Spheres center of coords (x y z): 8.49438178787879 20.5896088484848 36.5420204848485
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.95509997670405
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 25