usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): -2.78407407407407 28.043962962963 3.29722222222222
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1715
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 983
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 983
Number of spheres polar: 281, nonpolar: 568, out of current total: 983
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.70945 7.18973 18.05586 37.66300 -6.66134 12.98935
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 469
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 411
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 399
Spheres center of coords (x y z): -4.01637842105263 25.3693253132832 3.76565689223058
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.87294577120676
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 27