usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 31.2770714285714 15.0078214285714 -0.975857142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1399 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 655 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 655 Number of spheres polar: 102, nonpolar: 431, out of current total: 655 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.46696 41.21675 5.28636 24.97727 -10.81945 8.87971 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 34.3684360135135 17.1990381081081 -0.89095081081081 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.71051710776007 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28