usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -2.70681481481481 27.8324444444444 3.43040740740741 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1613 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 894 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 189, nonpolar: 551, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.69889 7.25895 17.85800 37.78945 -6.55862 12.54179 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 231 Spheres center of coords (x y z): -4.01185705627706 25.4172478787879 3.2922238961039 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.09847304866146 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 27