usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 30.61475 13.593125 -0.771625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1544 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 784 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 781 Number of spheres polar: 199, nonpolar: 385, out of current total: 781 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.69523 40.61403 3.65430 23.49613 -10.64227 9.19236 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 33.5977331979696 13.8670288324873 0.22766725888325 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.42464019378073 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 24