usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 30.6206666666667 16.8764545454545 -1.62354545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1452 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 813 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 813 Number of spheres polar: 219, nonpolar: 435, out of current total: 813 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.66865 40.60117 6.96436 26.86364 -11.56925 8.32006 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 34.1028208585859 18.9401001515152 -2.18123348484848 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4724749243436 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33