usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 30.29225 28.242625 23.82325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1600 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 964 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 964 Number of spheres polar: 270, nonpolar: 547, out of current total: 964 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.31614 40.28435 18.26900 38.24077 14.35050 33.61345 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 516 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 443 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 429 Spheres center of coords (x y z): 32.1227998834499 26.1478532867133 22.8393203030303 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.95849869858654 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 32