usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 0.0830625 31.77121875 -2.98675 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1799 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1067 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1067 Number of spheres polar: 207, nonpolar: 666, out of current total: 1067 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.91201 10.05050 21.82614 41.62674 -12.97612 6.98720 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 273 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 264 Spheres center of coords (x y z): 0.999687007575757 34.6220818181818 -2.28389818181818 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18075563921879 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32