usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 11.4202727272727 -5.19660606060606 -18.8791212121212 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1603 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1019 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1019 Number of spheres polar: 293, nonpolar: 607, out of current total: 1019 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.58356 21.38749 -15.15204 4.67976 -28.82648 -8.99765 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 509 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 434 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 410 Spheres center of coords (x y z): 12.1993065365854 -4.50273817073171 -21.3212557560976 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54756683663543 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33