usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -0.9706875 14.973375 -0.63434375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1594 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 920 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 920 Number of spheres polar: 244, nonpolar: 490, out of current total: 920 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.93612 9.01316 4.99918 24.58241 -10.56797 9.10116 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 453 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 387 Spheres center of coords (x y z): -0.625055322997417 10.8817406718346 0.051656356589147 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.66264097309512 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 32