usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -12.21959375 8.3205625 -25.41478125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1717 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 964 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 964 Number of spheres polar: 174, nonpolar: 674, out of current total: 964 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -22.06002 -2.24990 -1.67407 18.29166 -35.40929 -15.46828 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 267 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): -8.89969356807512 6.01031647887324 -24.7117461971831 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.56896810856702 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 32