usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 14.7791818181818 5.52813636363636 0.143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1480 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 816 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 162, nonpolar: 516, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.78917 24.71321 -4.46209 15.52340 -9.81638 10.01492 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 333 Spheres center of coords (x y z): 10.8085307807808 3.55025330330331 -0.0408543543543545 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.41391183565783 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22