usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 15.2435833333333 5.83754166666667 -0.199333333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1554 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 701 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 700 Number of spheres polar: 187, nonpolar: 361, out of current total: 700 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.24661 24.80338 -4.14922 15.63014 -10.13682 9.75923 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 366 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 286 Spheres center of coords (x y z): 11.2485131818182 2.92263164335664 -0.407611853146853 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.90920990464799 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24