DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-2-04.c.bkslab.org 4-May-12 02:59:57 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_dec_0084.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1613532 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -3.422001 -9.368000 -20.36200 grid max 34.57800 24.63200 21.63800 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 11.88098 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C38586136 8892 2286302 28 1138 1814.0 4.19 E C38586136 2 -5.98 -27.49 3.69 -1.77 -31.56 2 C38586136 11034 3216656 28 275 2900.7 7.23 E C38586136 2 -8.37 -29.29 3.07 -0.66 -35.25 3 C38586136 8106 1416478 28 3168 176.6 2.61 E C38586136 4 -5.51 -27.28 4.35 -1.27 -29.70 4 C38586136 8915 2096895 28 692 847.2 3.88 E C38586136 2 -4.53 -26.37 3.57 -1.77 -29.10 5 C38586136 11021 3088640 28 189 2316.7 6.83 E C38586136 2 -5.57 -29.84 3.11 -1.34 -33.64 6 C38586136 8440 1255470 28 4800 414.8 2.35 E C38586136 4 -6.93 -28.25 4.61 -1.05 -31.61 7 C38586136 8891 1640439 28 564 1116.0 3.05 E C38586136 2 -7.50 -24.97 3.00 -1.24 -30.70 8 C38586136 11023 3038919 28 175 1079.1 6.79 E C38586136 2 -6.20 -29.74 3.89 -0.63 -32.68 9 C38586136 10582 2613876 28 4662 550.6 4.69 E C38586136 4 -2.63 -34.14 4.43 -1.99 -34.34 10 C38586136 8917 1541138 28 719 850.5 2.93 E C38586136 2 -4.72 -28.47 3.95 -1.26 -30.51 11 C38586136 11036 2023895 28 165 1640.9 4.49 E C38586136 2 -11.19 -22.53 2.70 -1.02 -32.04 12 C66783310 5298 993489 23 65 1390.6 2.29 E C66783310 2 -4.89 -33.53 6.62 -1.72 -33.51 13 C66783310 12246 2036150 23 260 882.4 3.86 E C66783310 3 -13.87 -23.05 6.69 1.30 -28.94 14 C50375062 1291 555351 12 28 690.1 1.04 E C50375062 3 -7.07 -17.02 5.91 -1.29 -19.47 15 C50375062 1173 502760 12 18 438.9 0.95 E C50375062 3 -8.37 -16.81 5.36 -0.88 -20.70 16 C50375062 4486 1277244 12 5 3595.0 3.13 E C50375062 2 -13.28 -14.95 5.61 -0.05 -22.67 17 C50375062 1892 754011 12 12 705.8 1.42 E C50375062 3 -13.17 -14.25 5.63 -0.30 -22.09 18 C50322876 3339 1579767 20 270 316.2 3.40 E C50322876 3 -20.41 -27.61 15.12 -2.05 -34.95 19 C50322876 3380 361740 20 90 200.6 1.00 E C50322876 3 -19.91 -22.83 15.43 -2.26 -29.56 20 C50322876 3339 1140955 20 252 1192.1 2.53 E C50322876 3 -26.24 -23.47 15.08 -1.76 -36.39 21 C50322876 3407 483392 20 58 528.9 1.34 E C50322876 3 -15.15 -20.71 14.21 -1.46 -23.10 22 C27202355 11234 5163417 26 181 2934.3 9.31 E C27202355 2 -16.84 -28.03 3.88 -2.51 -43.51 23 C52834278 4051 2990223 14 459 3776.0 4.39 E C52834278 2 -9.25 -21.96 6.69 0.82 -23.71 24 C52834278 3307 1829940 14 378 2480.5 2.71 E C52834278 2 -12.80 -17.94 6.08 1.11 -23.56 25 C52834278 4285 2409590 14 333 2567.0 3.56 E C52834278 2 -9.55 -21.82 6.55 0.86 -23.96 26 C52834278 5884 3417580 14 426 4081.0 5.07 E C52834278 2 -8.94 -16.55 3.49 -1.05 -23.05 27 C44468549 13903 7063362 14 15 12873.2 12.06 E C44468549 2 -38.10 -19.12 19.01 -0.92 -39.13 28 C22508181 6125 745463 25 558 336.6 1.26 E C22508181 2 -15.82 -21.46 12.10 -2.25 -27.43 29 C20202114 5570 1223164 21 44 695.0 2.93 E C20202114 4 -16.02 -21.79 13.42 -0.21 -24.59 30 C58840621 1341 1483 20 1 4.0 0.03 E C58840621 1 -13.07 -8.27 12.64 -3.16 -11.86 31 C58840621 1075 1637 20 1 2.0 0.03 E C58840621 1 -13.44 -10.90 14.63 -3.20 -12.91 32 C58840621 1458 0 20 1 0.01 bump 33 C58840621 1220 0 20 1 0.01 bump 34 C58840621 1911 9138 20 1 12.0 0.13 E C58840621 1 -13.55 -10.14 21.50 -4.41 -6.60 35 C58840621 1725 5664 20 1 14.0 0.08 E C58840621 1 -12.63 -6.92 17.38 -3.60 -5.76 36 C58840621 1827 8642 20 1 24.1 0.13 E C58840621 1 -12.27 -8.75 22.00 -4.30 -3.31 37 C58840621 1800 3685 20 1 16.1 0.06 E C58840621 1 -8.83 -18.93 14.90 -3.93 -16.80 38 C58840621 1334 702 20 1 0.0 0.02 E C58840621 1 -8.70 107.34 13.82 -3.45 109.01 39 C58840621 1283 3632 20 1 12.7 0.06 E C58840621 1 -13.96 -23.74 16.25 -3.45 -24.89 40 C58840621 1337 3670 20 1 12.7 0.06 E C58840621 1 -6.14 -10.23 15.74 -3.28 -3.91 41 C58840621 1398 994 20 1 0.0 0.02 E C58840621 1 -13.96 -2.46 16.37 -3.94 -4.00 42 C58840621 1118 4270 20 1 24.0 0.08 E C58840621 1 -8.38 -9.27 16.01 -3.21 -4.85 43 C58840621 1092 1037 20 1 2.0 0.02 E C58840621 1 -13.15 59.59 15.46 -5.86 56.05 44 C58840621 1353 620 20 1 2.0 0.02 E C58840621 1 -7.95 95.76 10.42 -3.98 94.25 45 C58840621 1308 339 20 1 0.0 0.02 E C58840621 1 -13.47 76.43 17.93 -5.76 75.13 46 C58840621 1176 5806 20 1 22.0 0.08 E C58840621 1 -14.40 -20.22 16.16 -3.22 -21.67 47 C58840621 1486 2242 20 1 8.0 0.04 E C58840621 1 -11.55 11.82 16.03 -2.90 13.40 48 C58840621 1048 671 20 1 2.0 0.01 E C58840621 1 -12.00 2.86 13.67 -3.27 1.25 49 C58840621 1034 0 20 1 0.00 bump 50 C58840621 1242 559 20 1 2.0 0.02 E C58840621 1 -11.01 -15.42 13.07 -2.64 -16.01 51 C58840621 1023 0 20 1 0.01 bump 52 C58840621 1159 0 20 1 0.01 bump 53 C58840621 883 0 20 1 0.01 bump 54 C58840621 1426 2561 20 1 0.0 0.04 E C58840621 1 -10.41 -15.37 10.76 -3.54 -18.56 55 C58840621 1164 0 20 1 0.01 bump 56 C58840621 1181 338 20 1 0.0 0.02 E C58840621 1 -1.56 58.44 17.60 -3.18 71.30 57 C58840621 876 0 20 1 0.00 bump 58 C58840621 4664 19438 20 1 46.1 0.29 E C58840621 1 -13.51 7.31 13.04 -3.64 3.18 59 C58840621 1377 7594 20 1 37.0 0.11 E C58840621 1 -12.23 0.27 14.84 -3.62 -0.74 60 C20482291 1669 633031 19 21 122.0 1.28 E C20482291 2 -19.31 -23.34 22.34 -0.80 -21.11 61 C41715030 6666 4268109 20 2924 276.7 6.27 E C41715030 3 -44.76 -17.31 25.08 -1.17 -38.16 62 C66614036 14865 2345248 27 1378 894.2 4.30 E C66614036 2 -2.26 -36.00 6.27 -2.34 -34.33 63 C66614036 6666 953808 27 2430 528.2 1.73 E C66614036 3 -1.95 -31.09 6.39 -1.30 -27.95 EOF: ../database_link/dbgen_dec_0084.db.gz end of file encountered total minimization steps = 5618835 for debugging, time = 127.6700 solvation corrected scores: (a) 1 C27202355 score: -43.507 nathvy = 26 nconfs = 181 2 C44468549 score: -39.126 nathvy = 14 nconfs = 15 3 C41715030 score: -38.162 nathvy = 20 nconfs = 2924 4 C50322876 score: -36.386 nathvy = 20 nconfs = 252 5 C38586136 score: -35.254 nathvy = 28 nconfs = 275 6 C50322876 score: -34.946 nathvy = 20 nconfs = 270 7 C38586136 score: -34.336 nathvy = 28 nconfs = 4662 8 C66614036 score: -34.329 nathvy = 27 nconfs = 1378 9 C38586136 score: -33.640 nathvy = 28 nconfs = 189 10 C66783310 score: -33.512 nathvy = 23 nconfs = 65 11 C38586136 score: -32.680 nathvy = 28 nconfs = 175 12 C38586136 score: -32.036 nathvy = 28 nconfs = 165 13 C38586136 score: -31.612 nathvy = 28 nconfs = 4800 14 C38586136 score: -31.558 nathvy = 28 nconfs = 1138 15 C38586136 score: -30.702 nathvy = 28 nconfs = 564 16 C38586136 score: -30.509 nathvy = 28 nconfs = 719 17 C38586136 score: -29.703 nathvy = 28 nconfs = 3168 18 C50322876 score: -29.561 nathvy = 20 nconfs = 90 19 C38586136 score: -29.103 nathvy = 28 nconfs = 692 20 C66783310 score: -28.935 nathvy = 23 nconfs = 260 21 C66614036 score: -27.953 nathvy = 27 nconfs = 2430 22 C22508181 score: -27.431 nathvy = 25 nconfs = 558 23 C58840621 score: -24.893 nathvy = 20 nconfs = 1 24 C20202114 score: -24.592 nathvy = 21 nconfs = 44 25 C52834278 score: -23.961 nathvy = 14 nconfs = 333 26 C52834278 score: -23.707 nathvy = 14 nconfs = 459 27 C52834278 score: -23.558 nathvy = 14 nconfs = 378 28 C50322876 score: -23.105 nathvy = 20 nconfs = 58 29 C52834278 score: -23.047 nathvy = 14 nconfs = 426 30 C50375062 score: -22.669 nathvy = 12 nconfs = 5 31 C50375062 score: -22.089 nathvy = 12 nconfs = 12 32 C58840621 score: -21.670 nathvy = 20 nconfs = 1 33 C20482291 score: -21.106 nathvy = 19 nconfs = 21 34 C50375062 score: -20.700 nathvy = 12 nconfs = 18 35 C50375062 score: -19.472 nathvy = 12 nconfs = 28 36 C58840621 score: -18.564 nathvy = 20 nconfs = 1 37 C58840621 score: -16.799 nathvy = 20 nconfs = 1 38 C58840621 score: -16.007 nathvy = 20 nconfs = 1 39 C58840621 score: -12.914 nathvy = 20 nconfs = 1 40 C58840621 score: -11.860 nathvy = 20 nconfs = 1 41 C58840621 score: -6.600 nathvy = 20 nconfs = 1 42 C58840621 score: -5.764 nathvy = 20 nconfs = 1 43 C58840621 score: -4.852 nathvy = 20 nconfs = 1 44 C58840621 score: -3.996 nathvy = 20 nconfs = 1 45 C58840621 score: -3.910 nathvy = 20 nconfs = 1 46 C58840621 score: -3.312 nathvy = 20 nconfs = 1 47 C58840621 score: -0.742 nathvy = 20 nconfs = 1 48 C58840621 score: 1.250 nathvy = 20 nconfs = 1 49 C58840621 score: 3.184 nathvy = 20 nconfs = 1 50 C58840621 score: 13.403 nathvy = 20 nconfs = 1 51 C58840621 score: 56.048 nathvy = 20 nconfs = 1 52 C58840621 score: 71.297 nathvy = 20 nconfs = 1 53 C58840621 score: 75.129 nathvy = 20 nconfs = 1 54 C58840621 score: 94.254 nathvy = 20 nconfs = 1 55 C58840621 score: 109.015 nathvy = 20 nconfs = 1 Date and Time: 4-May-12 03:02:05 elapsed time (sec): 127.7300