usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): -3.34395833333333 -32.3129583333333 -0.0976666666666668
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1342
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 709
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 709
Number of spheres polar: 173, nonpolar: 411, out of current total: 709
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.21576 6.52118 -42.30143 -23.31577 -10.04372 9.89034
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 357
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 306
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 288
Spheres center of coords (x y z): -3.75640854166667 -37.0680759722222 -0.00553947916666685
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.40697517375652
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 24