usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -3.5874 16.33144 25.92584
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1318
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 722
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 722
Number of spheres polar: 185, nonpolar: 448, out of current total: 722
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.54232 6.34942 6.34809 25.60701 16.03261 35.88097
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 358
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 312
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 292
Spheres center of coords (x y z): -3.32787328767123 11.1523527739726 25.5714565410959
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.84222078074587
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 25