usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -10.663625 -9.39865625 0.11984375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1651 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 913 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 913 Number of spheres polar: 219, nonpolar: 544, out of current total: 913 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.75716 -0.69291 -19.33221 0.58360 -9.84150 10.08099 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): -6.77891247747748 -8.15745720720721 -0.314986756756756 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.66545958863485 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32