usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): -5.76066666666667 3.63878787878788 12.407696969697
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1484
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 864
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863
Number of spheres polar: 228, nonpolar: 438, out of current total: 863
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.75951 3.50818 -6.33582 13.62339 2.41061 22.40250
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 233
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 219
Spheres center of coords (x y z): -8.7244900456621 5.37854547945206 14.278041369863
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.87023883782167
Final number of output spheres is: 45
Number of polar spheres: 16
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 33