usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 5.83025925925926 -3.05940740740741 12.9867777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1678 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 867 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 867 Number of spheres polar: 188, nonpolar: 532, out of current total: 867 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.54626 15.80869 -13.04093 6.88130 3.05359 22.73405 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 229 Spheres center of coords (x y z): 9.86009637554586 -4.54179323144105 13.6644865502183 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78822938880763 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27