usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -4.13086363636364 2.06572727272727 13.7999545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1358 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 750 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 750 Number of spheres polar: 97, nonpolar: 466, out of current total: 750 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.00382 1.02900 -7.91697 11.94817 4.18503 23.76871 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 388 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 353 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 334 Spheres center of coords (x y z): -8.38175712574851 4.37335715568862 15.1544855389221 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.33064770940502 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 22