usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 17.2822941176471 7.47752941176471 7.19852941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1306 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 662 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 662 Number of spheres polar: 158, nonpolar: 384, out of current total: 662 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.28766 27.13798 -0.41749 17.47579 -2.79368 17.01860 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 234 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 184 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): 17.8333488636363 13.3156743181818 4.89420482954545 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.11729110909099 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 17