usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.6614242424242 62.4962727272727 24.5416666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1603 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 898 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 898 Number of spheres polar: 237, nonpolar: 421, out of current total: 898 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.82608 29.58172 52.52460 72.48887 14.57083 34.51212 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 507 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 450 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 444 Spheres center of coords (x y z): 18.6813487837838 62.717832545045 26.5987225675676 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89609473615794 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33