usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.6640909090909 62.7473333333333 24.7169090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1575 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 947 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 947 Number of spheres polar: 239, nonpolar: 461, out of current total: 947 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.72732 29.61650 52.86319 72.74548 14.72209 34.70638 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 518 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 437 Spheres center of coords (x y z): 18.6125371853547 63.5409820823799 26.9162253546911 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03292698349835 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33