usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.6664545454545 62.6879696969697 24.8938787878788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1667 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 902 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 902 Number of spheres polar: 164, nonpolar: 479, out of current total: 902 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.68680 29.62088 52.73157 72.65498 15.05385 34.64617 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 512 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 448 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 428 Spheres center of coords (x y z): 19.1677839485981 62.8337363785046 27.1218372429907 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44192674126842 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 33