usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.6061515151515 62.5410303030303 24.7420303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1654 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 941 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 939 Number of spheres polar: 212, nonpolar: 479, out of current total: 939 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.66088 29.47739 52.59542 72.50227 15.07043 34.59105 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 438 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 413 Spheres center of coords (x y z): 19.0386489346247 62.5495591767554 27.1416171670702 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30410302899868 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33