usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 19.7435757575758 62.4816363636364 24.6574545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1727 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 942 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 940 Number of spheres polar: 181, nonpolar: 504, out of current total: 940 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.76856 29.58072 52.50416 72.48035 14.72068 34.38941 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 528 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 456 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 434 Spheres center of coords (x y z): 19.2505216359447 62.7955294239632 26.8105108525346 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50095931829573 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33