usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 19.9814375 62.20428125 24.43059375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1606 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 862 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 220, nonpolar: 418, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.98458 29.79047 52.20900 72.19977 14.44352 34.26658 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 312 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 250 Spheres center of coords (x y z): 18.94615904 62.72364496 27.11694908 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60402086944547 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32