usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 20.0334375 62.20115625 24.41346875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1579 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 896 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 250, nonpolar: 428, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.17881 29.82717 52.21803 72.16814 14.42339 34.39883 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 507 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 445 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 423 Spheres center of coords (x y z): 18.9563756028369 62.7089389598109 27.0102831678487 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.47521395072052 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32