usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 20.0291470588235 61.3350882352941 24.8017647058823 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1701 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 910 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 909 Number of spheres polar: 258, nonpolar: 407, out of current total: 909 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.04615 30.00443 51.38820 71.33398 15.35825 34.73569 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 318 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 265 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 252 Spheres center of coords (x y z): 18.7783001587302 62.1974834523809 27.388030515873 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60386236032743 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 34