usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 16.2694516129032 18.9953548387097 -1.38074193548387 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1272 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 902 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 901 Number of spheres polar: 255, nonpolar: 438, out of current total: 901 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.71310 26.26095 9.00379 28.82504 -10.90179 8.56816 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 229 Spheres center of coords (x y z): 18.1928149781659 20.1674180786026 -1.6068323580786 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4765625430371 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 31