usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 21.14228125 14.314375 14.7555 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1096 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 775 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 775 Number of spheres polar: 206, nonpolar: 365, out of current total: 775 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.15417 31.12846 4.41963 23.41425 4.87771 24.68859 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 254 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 23.5866463425926 14.560052037037 15.4859948611111 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.66586410780909 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 32