usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 21.691 14.1303333333333 14.8480606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1236 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 887 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 887 Number of spheres polar: 197, nonpolar: 399, out of current total: 887 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.03137 31.68294 4.14322 24.11910 4.93076 24.59318 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 490 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 432 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 427 Spheres center of coords (x y z): 23.9976049882904 15.5140370725995 14.2695804918033 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75809795424385 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33