usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.64775 52.5840625 19.3123125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1324 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 753 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 753 Number of spheres polar: 199, nonpolar: 348, out of current total: 753 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.31946 17.62929 42.59441 61.56527 9.35508 29.03409 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 415 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 345 Spheres center of coords (x y z): 7.45003423188406 49.3269526086957 20.0675747536232 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26717805448701 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32