usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 7.79842424242424 51.7284848484848 18.7198181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1906 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1042 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1041 Number of spheres polar: 200, nonpolar: 472, out of current total: 1041 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.18842 17.75749 41.72998 61.28454 8.81712 28.68590 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 368 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 316 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 310 Spheres center of coords (x y z): 7.79444493548387 48.2199809677419 18.6169920967742 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99862803148505 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33