usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 22.04003125 29.2368125 33.88175 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1327 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 866 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 866 Number of spheres polar: 221, nonpolar: 456, out of current total: 866 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.11272 32.03714 19.31604 39.20311 23.94125 43.87915 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 219 Spheres center of coords (x y z): 24.4921594977169 28.7090979452055 34.3296985844749 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6653865745006 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32