usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 17.62871875 43.829375 76.27096875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1206 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 758 Number of spheres polar: 174, nonpolar: 331, out of current total: 758 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.65055 27.25522 33.90703 53.65306 66.28555 86.19494 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 446 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 387 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 383 Spheres center of coords (x y z): 18.8300761357702 44.2431493472585 77.6211419321149 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87388604641341 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 32