usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 19.92990625 29.3725625 79.30428125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1387 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847 Number of spheres polar: 237, nonpolar: 359, out of current total: 847 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.97573 29.92439 19.38375 38.56714 69.36937 89.23155 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 322 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 280 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 270 Spheres center of coords (x y z): 22.0566499259259 30.2127394814815 80.5798060000001 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.22211037646068 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32