usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -1.65678787878788 22.0285454545455 23.0762727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 693 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 692 Number of spheres polar: 167, nonpolar: 373, out of current total: 692 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.60639 8.18977 12.31700 32.01868 13.10251 32.90192 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 215 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Spheres center of coords (x y z): -4.23450736196319 22.388003006135 22.878960613497 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96267275495088 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33